This is what you end up with by just cutting it, NOW you can emboss it.
Leave the BIG white base plate in the Big Shot. Add the Black plate that come with the BIG Impressions Kit for Big Shot. Turn over the piece of cardstock with the nesties still in place.
Add the rubber mat from the Big Impressions Kit, then a Clear Cutting Plate.
Roll through the Big Shot.

This is what it looks like now.